RnoEX0009729 @ rn6
Exon Skipping
Gene
ENSRNOG00000055481 | Ankrd7
Description
ankyrin repeat domain 7 [Source:RGD Symbol;Acc:1564660]
Coordinates
chr4:45570158-45586228:+
Coord C1 exon
chr4:45570158-45570264
Coord A exon
chr4:45577009-45577146
Coord C2 exon
chr4:45585994-45586228
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGTTAATGGCTTGCTCCAGAAC
3' ss Score
5.24
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GATGGCTACACCCCGCTTTTACTTGCTGTTGCTGAAAATAATGAAAATATGGTAAAATTCCTTCTGAAGAAAGGAGCCGATGTAAATGCATCAGATAAAAACCACAG
Seq A exon
AACAGCCATCATGATTGCTCTGATTGTTGAACCAACAAATTCTGTAAAACTTCTTCTTCAGCAAGATGCAGACCTAGCTTGTGAAGATATTTATGGATTTACAGCTGAGGAATATGCTTCATTTAATGGCTTTACTAT
Seq C2 exon
GTATCATCAGTTAATTGCCAATAATGAGAAAAAGAAGAAAACTGAGCAAACAGCTCACTGAGCAGTTTTTCTTGTCACTTTATATTTTCTTTCAAGAAGGGAAGCAGCCTTTTCCTTTCAAAGCAGTACCTAACTATGGAATTAAAATTTTCCTCTCTTTTAAAATCATAAATCATGTTGAAGATCTTCATTAACATTTTCTGATAACCCATTTAATAAAAATTAAAAATTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055481_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.550
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.3=86.1),PF127962=Ank_2=PU(9.0=16.7)
A:
PF127962=Ank_2=FE(68.7=100)
C2:
PF127962=Ank_2=PD(20.9=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTACACCCCGCTTTTA
R:
AGTTAGGTACTGCTTTGAAAGGA
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]