HsaEX0004560 @ hg38
Exon Skipping
Gene
ENSG00000106013 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr7:118236041-118239998:+
Coord C1 exon
chr7:118236041-118236147
Coord A exon
chr7:118236790-118236926
Coord C2 exon
chr7:118239909-118239998
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATTTCTATCTCTTGCTCCAGAAC
3' ss Score
9.12
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GATGGGTATACTCCACTATTAGTTGCCGTTATTAACAATAATCCAAAAATGGTAAAATTTCTTCTGGAGAAAGGGGCTGATGTGAATGCTTCAGATAATTATCAAAG
Seq A exon
AACAGCCCTTATTCTTGCTGTCAGTGGTGAACCACCATGTTTAGTAAAGCTTCTTCTTCAGCAAGGTGTGGAATTATGTTACGAAGGTATTGTGGATTCACAGCTGAGGAATATGTTTATTTCCATGGTTTTACTGC
Seq C2 exon
ATAGATACCCACAATTCACTGCGAGCCATGGAAAGAAGAAACATGCTAAATAGACACCTTATTCTTGGCACTACATGTGACTAAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106013_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(47.0=86.1)
A:
PF127962=Ank_2=PD(59.2=61.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGTATACTCCACTATTAGTTGC
R:
CACATGTAGTGCCAAGAATAAGGTG
Band lengths:
186-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development