MmuEX6003087 @ mm10
Exon Skipping
Gene
ENSMUSG00000029517 | Ankrd7
Description
ankyrin repeat domain 7 [Source:MGI Symbol;Acc:MGI:1922446]
Coordinates
chr6:18869233-18879586:+
Coord C1 exon
chr6:18869233-18869339
Coord A exon
chr6:18869894-18870031
Coord C2 exon
chr6:18879341-18879586
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGTGAATGTCTTGCTCCAGAAC
3' ss Score
6.85
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GACGGTCACACTCCGCTTTTACTTGCTGTTGCTGAAAATAATGAAAATATGGTAAAATTCCTTCTGAAGAAAGGAGCAGATGTAAATGCATCAGATAAAAACCACAG
Seq A exon
AACAGCCATCATGATTGCTCTGATTGTTGAACCAACAAGTTCTGTAAAACTTCTTCTTCAGCAAGATACGGACCTAGCCCACAAAGATATTTATGGATTTACAGCTGAGGAATATGCTTCATTTAATGGCTTTACTAT
Seq C2 exon
GTATCACCATATAACTGCCAATAATGAGAACAAGAAGAAAACAGAGCAAACAGCTTACTGACTGAGCAGTTTTTCTTGTTATTTTATATTTTCTTCCTACAAAGCATACATCCTTTTTCTTCCAAAGCAATATTTAAATATGGAATTAAAATTTACCTCTGCTTTGAAATTGTAAATCATTTTAAAGATCTTCATTAACATTTTCTGACAACTTATGTACTAAAAATTAAAAATTCTATGGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029517_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.700
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=86.1),PF127962=Ank_2=PU(10.8=19.4)
A:
PF127962=Ank_2=FE(70.8=100)
C2:
PF127962=Ank_2=PD(16.9=52.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTTGCTGAAAATAATGAAAA
R:
ACAATTTCAAAGCAGAGGTAAATTTT
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types