HsaEX0004560 @ hg19
Exon Skipping
Gene
ENSG00000106013 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:18588]
Coordinates
chr7:117876095-117880052:+
Coord C1 exon
chr7:117876095-117876201
Coord A exon
chr7:117876844-117876980
Coord C2 exon
chr7:117879963-117880052
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATTTCTATCTCTTGCTCCAGAAC
3' ss Score
9.12
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GATGGGTATACTCCACTATTAGTTGCCGTTATTAACAATAATCCAAAAATGGTAAAATTTCTTCTGGAGAAAGGGGCTGATGTGAATGCTTCAGATAATTATCAAAG
Seq A exon
AACAGCCCTTATTCTTGCTGTCAGTGGTGAACCACCATGTTTAGTAAAGCTTCTTCTTCAGCAAGGTGTGGAATTATGTTACGAAGGTATTGTGGATTCACAGCTGAGGAATATGTTTATTTCCATGGTTTTACTGC
Seq C2 exon
ATAGATACCCACAATTCACTGCGAGCCATGGAAAGAAGAAACATGCTAAATAGACACCTTATTCTTGGCACTACATGTGACTAAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106013_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(47.0=86.1),PF0002325=Ank=PU(6.2=5.6)
A:
PF0002325=Ank=PD(90.6=61.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGTATACTCCACTATTAGTTGC
R:
CACATGTAGTGCCAAGAATAAGGTG
Band lengths:
186-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)