BtaEX0001320 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11400123-11404119:+
Coord C1 exon
chr13:11400123-11400229
Coord A exon
chr13:11401766-11401903
Coord C2 exon
chr13:11404052-11404119
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCATCTCTCTATTGTTTTAGAAC
3' ss Score
9.75
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GATAACCTCACACCGCTGTTACTTGCTATAATTGAAAGGAGAGCGCAAATGGTGGAGTTTTTAGTAAAGAACGGAGCAAATATACATGCAGTTGATAAATTGAAAAG
Seq A exon
AACAGCCCTCATGCTTGCTGTCAATTATGGATCAACAAATGTAGTTGGTCTTCTTCTTCAGCAAGGTGTTGACATCTTTTCTCAAGATGTTTTTGGACAGACTGCAGAAGACTATGCTATTATTAGTGGCTTTAATAT
Seq C2 exon
CATTCGCCAACTGATTTCTGCATATAAAGAAGAGAGACCTAAAACTCCTCCTGAAAATAGCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-10/38=9-11
Average complexity
C3*
Mappability confidence:
87%=80=94%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.680
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=86.1),PF0002325=Ank=PU(3.1=2.8)
A:
PF0002325=Ank=PD(93.8=63.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCACACCGCTGTTACTTG
R:
TGGGTTGCTATTTTCAGGAGGA
Band lengths:
170-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development