BtaEX0001343 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11367385-11404119:+
Coord C1 exon
chr13:11367385-11367490
Coord A exon
chr13:11368976-11369040
Coord C2 exon
chr13:11404052-11404119
Length
65 bp
Sequences
Splice sites
3' ss Seq
TCATCTCTCTGTTGTTTTAGAAC
3' ss Score
10.1
5' ss Seq
AAGGTGTTG
5' ss Score
1.36
Exon sequences
Seq C1 exon
GATGATCTGATACCACTGTTACTTGCTATACATGAAAGAAGAGGGCAAATGGTGGAGGTTTTAGTGAAGAAAGAAACAAATATACATCGGTTGATAAGATGAAAAG
Seq A exon
AACAGCCCTCATGCTTGCTGTCAAGTATGAATCAGCAAATGTTGTCAGACTTCTTCTTCAGCAAG
Seq C2 exon
CATTCGCCAACTGATTTCTGCATATAAAGAAGAGAGACCTAAAACTCCTCCTGAAAATAGCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-6/38=5-11
Average complexity
S
Mappability confidence:
87%=100=92%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.680
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000008040fB218
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTGATACCACTGTTACTTGCT
R:
TGGGTTGCTATTTTCAGGAGGA
Band lengths:
171-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development