HsaEX6080633 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr8:43300518-43304769:+
Coord C1 exon
chr8:43300518-43300624
Coord A exon
chr8:43301973-43302110
Coord C2 exon
chr8:43304699-43304769
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTATCTCTATATTATTTTAGAAC
3' ss Score
7.98
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GGTGGCCTCACACCACTTTTGCTTGCTGTACATGGACAAAAACAGCGAATGGTGAAATTTTTAATCAAGAAAAAAGCTAATTTAAATGCACTTGATAGGTTTGGAAG
Seq A exon
AACTGCCCTCATACTTGCTGTACGTTGTGGATCAGCAAGTATAGTTAGTCTTCTACTTCAGCAAAATATTGATGTATTTTCTCAAGATGTATTTGGACAAACTGCTGAAGATTATGCAGTTTCTAGTCATCATAGTAT
Seq C2 exon
AATTTGCCAATTACTTTCTGACTACAAAGAAAACCAGATGCCAAACAACTCTTCTGGAAATAGCAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
Hs.531579_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACACCACTTTTGCTTGC
R:
TGGATTGCTATTTCCAGAAGAGTTGT
Band lengths:
172-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains