HsaEX6080633 @ hg19
Exon Skipping
Gene
ENSG00000188877 | AC022616.1
Description
POTE ankyrin domain family, member A [Source:HGNC Symbol;Acc:33893]
Coordinates
chr8:43155661-43159912:+
Coord C1 exon
chr8:43155661-43155767
Coord A exon
chr8:43157116-43157253
Coord C2 exon
chr8:43159842-43159912
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTATCTCTATATTATTTTAGAAC
3' ss Score
7.98
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GGTGGCCTCACACCACTTTTGCTTGCTGTACATGGACAAAAACAGCGAATGGTGAAATTTTTAATCAAGAAAAAAGCTAATTTAAATGCACTTGATAGGTTTGGAAG
Seq A exon
AACTGCCCTCATACTTGCTGTACGTTGTGGATCAGCAAGTATAGTTAGTCTTCTACTTCAGCAAAATATTGATGTATTTTCTCAAGATGTATTTGGACAAACTGCTGAAGATTATGCAGTTTCTAGTCATCATAGTAT
Seq C2 exon
AATTTGCCAATTACTTTCTGACTACAAAGAAAACCAGATGCCAAACAACTCTTCTGGAAATAGCAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188877-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.600
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACACCACTTTTGCTTGC
R:
TGGATTGCTATTTCCAGAAGAGTTGT
Band lengths:
172-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)