MmuEX6035206 @ mm9
Exon Skipping
Gene
ENSMUSG00000063932 | Poteg
Description
POTE ankyrin domain family, member G [Source:MGI Symbol;Acc:MGI:1918202]
Coordinates
chr8:28563710-28569400:+
Coord C1 exon
chr8:28563710-28563816
Coord A exon
chr8:28567199-28567336
Coord C2 exon
chr8:28569339-28569400
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTATATATCTGCTGTTTTAGAAA
3' ss Score
7.35
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GATGGCTTCACACCACTGTTGCTGGCACTCCGAGAAAAGCGGGTGGAGGTGGCAGAGTTTTTAGTAAGAATGGGAGCAGACATACACGTGGTAGATGAGCTGCAAAG
Seq A exon
AAACACCTTGATATACGCTATAAGATGTGGATCAAAAGATCTGTCTGTATTACTCCTTGAGAAAGGTATTGACTTCTTCTATAAGGATGTCTTCGGATGGACAGCATTACGCTACGCTATTGAAGGCCACTGTACTTT
Seq C2 exon
TAGACAGACACTTCTGGATTTTGAAGAAAGTCTACATAGTAACAAAAAAGATAAGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063932-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.364
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(46.3=86.1),PF136371=Ank_4=PU(0.1=0.0)
A:
PF136371=Ank_4=WD(100=100.0)
C2:
PF136371=Ank_4=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTTCACACCACTGTTGC
R:
AGACTTTCTTCAAAATCCAGAAGTGT
Band lengths:
139-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: