BtaEX0001344 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11395312-11404119:+
Coord C1 exon
chr13:11395312-11395426
Coord A exon
chr13:11395589-11395762
Coord C2 exon
chr13:11404052-11404119
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTTGGCACAACACTGACAGGCC
3' ss Score
1.54
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GACTGCGCTCCACTTGGCCTGTGCCAATGGCCATTCAGCGGTGGTCACTCTGCTCCTGGAGAGAAAATGCCAGCTTAACCTCTGTGACAATGAAAACAGGACCGCGCTGATGAAG
Seq A exon
GCCGTAGAATGCCAAGAAGAGGAGTGTGTGACTCTTCTGCTGGAGCATGGTGCCGACCCAAATGTCATGGACGTCTGTGGGAACACCGCTCTCCACTATGCTGTCTTTTGCCAGAATCTATCACTCGCAGCAAAGCTGCTTTCCTGTGACGCCAATATAGAAGCCAAGAACAAG
Seq C2 exon
CATTCGCCAACTGATTTCTGCATATAAAGAAGAGAGACCTAAAACTCCTCCTGAAAATAGCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-8/38=7-11
Average complexity
C1
Mappability confidence:
86%=88=89%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.680
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(90.9=76.9),PF127962=Ank_2=PU(2.2=5.1)
A:
PF127962=Ank_2=FE(61.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCCACTTGGCCTGTG
R:
CTGGGTTGCTATTTTCAGGAGGA
Band lengths:
178-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development