DreEX0000427 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3514756-3516217:-
Coord C1 exon
chr25:3516103-3516217
Coord A exon
chr25:3515375-3515548
Coord C2 exon
chr25:3514756-3514862
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTCTCGCAGGCG
3' ss Score
11.43
5' ss Seq
AAGGTCTCT
5' ss Score
0.9
Exon sequences
Seq C1 exon
AACTGCGCTGCATATCGCTTGTGCCTGTGGACACACGGACGTGGTACAGTACTTGGTGGAGAGCAAAGTGAAGCTCAACTTATGTGACAATCAGAACCGCTCCGCCTTAATGAAG
Seq A exon
GCGGTTCAGTGTGAACAAGATCGCTCCGTCTCTTTGCTCCTGGAACACGAGGCCGATCCAAACCTGGTGGACATCAATGGAAACACAGCATTACACCTGTCTGCCCGCATCCCTTCTTTACCCGTAGCACTACAGCTCCTGGAGCACTCAGCCAACATCGACGCACAAAATAAG
Seq C2 exon
GATGGCAACACTCCACTGATGCTGGCTTTGATGGAAAACCACGCAGACATGACGGAGCTTTTACTGAAAGAGGGAGCGGATGTTAATGTCAAGAACCAGGAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.167
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(41.3=100)
A:
PF127962=Ank_2=PD(25.0=39.7),PF0002325=Ank=WD(100=56.9)
C2:
PF0002325=Ank=WD(100=91.7),PF127962=Ank_2=PU(7.5=13.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGCATATCGCTTGTG
R:
CGCTGCTCCTGGTTCTTGAC
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]