MmuEX6099289 @ mm10
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23207476-23226988:+
Coord C1 exon
chr2:23207476-23208104
Coord A exon
chr2:23212660-23212833
Coord C2 exon
chr2:23226914-23226988
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTACAATCTCTTAAGGCT
3' ss Score
5.09
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
CCTATGACAAGTGATAATATTTGGATAAGGATGAGTGGGCTTATTACATCGTTGATACTTAGATAACGAATAATGGGCTAATTATAAATATTAAAAACAGGAGGGTGGACTTATAATTCGATATGAGATGGGGAGAGTCTGCTTGTTATAATAACGTTGATACTGGGGCAGTTAACGGTTGGTTTGTTATAAATAACCTTGCCTGAGATGGGAGGAAAGTACAGCCGTGGGGAAGAGAGGAGGCCTTTGGGGTTTCCAGGCTTCTCTGCGCTGTGTTGCTGTCAGAAAACAAATAGGGAAGAGACCCCCTTGGGTTTCTGCGATATTAAGGCACGGAGAAGTAACCTGAGCTTTGGAAGGGAGGATCCTGCTTATTTAGACATGGCTTACTTTCCTGACAATGATCTGCACATGGCGGCCTGTGCAGGCGATTTACCTTTTGTGCGGCTGTACTTTACTCTGGGTAAATACGAAGTCAATCACAGAGACAGGGAGAATAG
Seq A exon
GCTGTCCAAAGCTGGGAAGATAAAATCGTGTGTTTTCTGCTAGAGCACCATGCTAACCTGCACATTAAAGACAGCATGGGTAACACTGCTCTGCACTATGCTGTCTATAGCGGGAATTTAGCAACGGCTGCCAGGCTGCTACAGTACGGAGCAGATATTGAGGAAAGGACAAAA
Seq C2 exon
GGAGAACAGACTGAAGATGGCACAATTCTTAGTAAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=31.6)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.2=62.1)
C2:
PF127962=Ank_2=PD(44.9=86.1),PF127962=Ank_2=PU(10.3=19.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACGGAGAAGTAACCTGA
R:
TCTGTGAGTCAACTGCATGCA
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types