MmuEX6099289 @ mm9
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23067913-23082508:+
Coord C1 exon
chr2:23067913-23068027
Coord A exon
chr2:23068180-23068353
Coord C2 exon
chr2:23082402-23082508
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTACAATCTCTTAAGGCT
3' ss Score
5.09
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAATGCCATGCACTTTGCCTGCTTCTATGGACATTTAGAATTGGTGATATATCTCTGGAGGCGTGGTTGTGAGATTAATGTGTGTGACAATCATAACATCACACCCCTGATGAAG
Seq A exon
GCTGTCCAAAGCTGGGAAGATAAAATCGTGTGTTTTCTGCTAGAGCACCATGCTAACCTGCACATTAAAGACAGCATGGGTAACACTGCTCTGCACTATGCTGTCTATAGCGGGAATTTAGCAACGGCTGCCAGGCTGCTACAGTACGGAGCAGATATTGAGGAAAGGACAAAA
Seq C2 exon
GACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAGATGGCACAATTCTTAGTAAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.2=62.1)
C2:
PF127962=Ank_2=PD(44.9=86.1),PF127962=Ank_2=PU(10.3=19.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCCATGCACTTTGCCTG
R:
TCTGTGAGTCAACTGCATGCA
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: