GgaEX6000888 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24067098-24067851:+
Coord C1 exon
chr1:24067098-24067212
Coord A exon
chr1:24067456-24067629
Coord C2 exon
chr1:24067745-24067851
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTGTGTTGTTTCCAGGCA
3' ss Score
10.28
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GACACCACTGCATCTTGCTTGTGCAAATGGACATGCGGATGTCGTTACGTTTCTAGTAGAAAGCAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAG
Seq A exon
GCAGTACAATGCCAGCAAGAAAAATGTGTGGCAATCCTGCTGGAGCACGGTGCTGATCCGAACTTGGCAGATGCTAACGGCAACACTGCCCTTCACCTGGCTGCTGTAGCTCCTAACACATTTCTAGCAGGGATGTTAATTGAGCACAATGCCCATATTGATGCTCAGAATAAG
Seq C2 exon
GAGGGATGTACTCCCCTTACTCTTGCTGTCTCTGAACATCATCAAGAGATGGTAGAGCTCCTTCTTAAAAAAGGAGCTGATGTTAATGCTCGAGATCTGTGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.017 C2=0.028
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(41.3=100)
A:
PF127962=Ank_2=PD(25.0=39.7),PF0002325=Ank=WD(100=56.9)
C2:
PF138571=Ank_5=PU(27.3=41.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCACTGCATCTTGCTTGT
R:
CTTTCACACAGATCTCGAGCA
Band lengths:
221-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]