BtaEX6063866 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MX15]
Coordinates
chr13:17793279-17798556:+
Coord C1 exon
chr13:17793279-17793393
Coord A exon
chr13:17793552-17793725
Coord C2 exon
chr13:17798450-17798556
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTTGGCACAACACTAACAGGCC
3' ss Score
2.29
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
GACTGCGCTCCATTTGGCCTGTGCCAATGGCCATTCAGCGGTGGTCACTCTCCTCCTGGAGAGAAAATGCCTGCTTAACCTCTGTGACAATGAAAAGAGGACAGCGCTGATGAAG
Seq A exon
GCCGTAGAATGCCAAGAGGAGGAGTGTGCGACTCTTCTGCTGGAGCATGGTGCCGACCCAAATGTCATGGACGTCTGTGGCAACACCGCTGTCCACTACGCTGTCTTTTGCCAGAATTTATCACTCGCAGCAAAGCTGCTTTCCTATGACGCCGATATAGAAGCCAGGAACAAG
Seq C2 exon
GATGACCTGACACCACTGTTACTTGCGATATGTGAAAGAAGAGGGCAAATGGTGGAGTTTTTAGTAAAGAAAAAAGCAAATATACATGCGGTTGATAAGATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017012-'1-6,'1-1,2-6=AN
Average complexity
A_S
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(51.5=60.3),PF093435=DUF2460=PU(30.8=34.5)
C2:
PF127962=Ank_2=PD(45.6=86.1),PF093435=DUF2460=FE(53.8=100),PF0002325=Ank=PU(6.1=5.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCGCTCCATTTGGCC
R:
CTTTTCATCTTATCAACCGCATGT
Band lengths:
222-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]