MmuEX0005064 @ mm9
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118506214-118509403:-
Coord C1 exon
chr6:118509289-118509403
Coord A exon
chr6:118508956-118509129
Coord C2 exon
chr6:118506214-118506320
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTTGATGCACTAACACCAGGCC
3' ss Score
3.29
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
GACTGCTCTACATCTTGCCTGTGCTTACGGCCACCCAGAAGTGGTGACTCTCTTAGTAGAGAGAAAATGTGAGATAGATGCCCGTGACAGCGAGAGCAGCACGGCCCTCATTAAG
Seq A exon
GCCGTGCAGTGCCAGGAGGAAGAATGTGCAGCCATACTGCTGGACCACGGGGCCGATCCAAATGTGATGGACAGCAGCGGCAACACCGCCCTCCACTACGCGGTCTACAGTGAGAACACGTCCATGGCAGCCAAACTGCTCGCACACAATGCAAACATAGAAGCCAAAAACAAG
Seq C2 exon
GATGACCTAACACCTATGTTACTTGCTGTAAAGGAAAATAAACAACATATTGTGGAATTTTTAGTAAAGAAGAAAGCAAGTATTCACGCAGTTGATCAGCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.028
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
C2:
PF0002325=Ank=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTACATCTTGCCTGTGC
R:
TTCCAAGCTGATCAACTGCGT
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: