BtaEX0001342 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11362206-11369040:+
Coord C1 exon
chr13:11362206-11362379
Coord A exon
chr13:11367385-11367490
Coord C2 exon
chr13:11368976-11369040
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTCCCTGTTTTACAGGAT
3' ss Score
10.46
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
GCCATAGAATGCCAAGAGGAGGAGTGTGCGACTCTTCTGCTGGAGCATGGTGCTGACCCAAATGTCATGGACGTCTGTGGCAACACCGCTGTCCACTACGCTGTCTTTTGCCAGAATTTATCACTCGCAGCAAAGCTGCTTTCCTATGACGCCGATATAGAAGCCAGGAATAAG
Seq A exon
GATGATCTGATACCACTGTTACTTGCTATACATGAAAGAAGAGGGCAAATGGTGGAGGTTTTAGTGAAGAAAGAAACAAATATACATCGGTTGATAAGATGAAAAG
Seq C2 exon
AACAGCCCTCATGCTTGCTGTCAAGTATGAATCAGCAAATGTTGTCAGACTTCTTCTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-5/38=4-6
Average complexity
S
Mappability confidence:
87%=100=88%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATAGAATGCCAAGAGGAGG
R:
TGCTGAAGAAGAAGTCTGACAACA
Band lengths:
237-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development