MmuEX6035207 @ mm10
Exon Skipping
Gene
ENSMUSG00000063932 | Poteg
Description
POTE ankyrin domain family, member G [Source:MGI Symbol;Acc:MGI:1918202]
Coordinates
chr8:27450153-27456864:+
Coord C1 exon
chr8:27450153-27450326
Coord A exon
chr8:27453238-27453344
Coord C2 exon
chr8:27456727-27456864
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTTGTTGTTTTGCAGGAT
3' ss Score
10.67
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
TCTGTCCAATGCTGGAAGCAGAAATGTGCGACCGTGCTGCTGGAGCACGGCGCTGATCCGAACATTAGAGACAGCAGTGGCAACAGTGCCTTGCACTACGCTGTGTACAACGGGCATCAGGAGATGGCCTCCCTACTGCTTCAGTACAACGCTGATATCGAACAAAAAACCAAG
Seq A exon
GATGGCTTCACACCACTGTTGCTGGCACTCCGAGAAAAGCGGGTGGAGGTGGCAGAGTTTTTAGTAAGAATGGGAGCAGACATACACGTGGTAGATGAGCTGCAAAG
Seq C2 exon
AAACACCTTGATATACGCTATAAGATGTGGATCAAAAGATCTGTCTGTATTACTCCTTGAGAAAGGTATTGACTTCTTCTATAAGGATGTCTTCGGATGGACAGCATTACGCTACGCTATTGAAGGCCACTGTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063932-'1-12,'1-2,4-12=AN
Average complexity
A_NA
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(50.7=58.6)
A:
PF127962=Ank_2=PD(46.3=86.1),PF136371=Ank_4=PU(0.1=0.0)
C2:
PF136371=Ank_4=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCTGATCCGAACATTAGA
R:
CAGTGGCCTTCAATAGCGTAG
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types