RnoEX0068384 @ rn6
Exon Skipping
Gene
ENSRNOG00000012218 | Poteg
Description
POTE ankyrin domain family, member G [Source:RGD Symbol;Acc:1359470]
Coordinates
chr16:68825135-68830449:-
Coord C1 exon
chr16:68830276-68830449
Coord A exon
chr16:68827398-68827504
Coord C2 exon
chr16:68825135-68825272
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTTGTTGTCTTGCAGGAT
3' ss Score
12.59
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
TCTGTCCAGTGCTGGAAGCAGAAATGCGCGACCCTGCTGCTGGAGCACGGTGCTGATCCGAACGTTATCGACAGCAGTGGCAACAGTGCCTTGCACTACGCTGTGTACAATGGGCATGAGGAGATGGTGGCTCTACTGCTTCAATACAAAGCCAATATTGAGCAAAAAACCAAG
Seq A exon
GATGGCTTCACACCACTGCTGCTGGCACTCAGAGAGAAGAGGGTGGAGGTAGCAGAGCTTTTAGTAAGAATGGGAGCCGATGTCCATGTTGTAGATGAACTGCAAAG
Seq C2 exon
AAACACCCTGATATACGCTATAAGATGTGGGTCAAAAGGTCTGGCTGTATCACTCCTCAAGAAAGGTATCGATTTCTTCTACAAGGATGTCTTCGGATGGACGGCCCTGCGCTACGCTATCGAGGGCCACTGTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012218-'3-6,'3-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.5=41.8),PF0002325=Ank=WD(100=54.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTATCGACAGCAGTGGCAA
R:
AGTACAGTGGCCCTCGATAGC
Band lengths:
248-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]