RnoALTA0003613-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000055481 | Ankrd7
Description
ankyrin repeat domain 7 [Source:RGD Symbol;Acc:1564660]
Coordinates
chr4:45570158-45577146:+
Coord C1 exon
chr4:45570158-45570264
Coord A exon
chr4:45577070-45577073
Coord C2 exon
chr4:45577074-45577146
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
CTGTAAAACTTCTTCTTCAGCAA
3' ss Score
5.2
Exon sequences
Seq C1 exon
GATGGCTACACCCCGCTTTTACTTGCTGTTGCTGAAAATAATGAAAATATGGTAAAATTCCTTCTGAAGAAAGGAGCCGATGTAAATGCATCAGATAAAAACCACAG
Seq A exon
CAAG
Seq C2 exon
ATGCAGACCTAGCTTGTGAAGATATTTATGGATTTACAGCTGAGGAATATGCTTCATTTAATGGCTTTACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055481-4-7,4-6,4-5,4-4-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.3=86.1),PF127962=Ank_2=PU(9.0=16.7)
A:
NA
C2:
PF127962=Ank_2=FE(68.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTGAAGAAAGGAGCCGA
R:
TGAAGCATATTCCTCAGCTGT
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]