MmuEX6099423 @ mm9
Exon Skipping
Gene
ENSMUSG00000036770 | 4933433C11Rik
Description
RIKEN cDNA 4933433C11 gene [Source:MGI Symbol;Acc:MGI:1921722]
Coordinates
chr2:25069351-25069916:-
Coord C1 exon
chr2:25069756-25069916
Coord A exon
chr2:25069528-25069662
Coord C2 exon
chr2:25069351-25069439
Length
135 bp
Sequences
Splice sites
3' ss Seq
GAGCTTGCCTTTTGCATCAGGGC
3' ss Score
5.46
5' ss Seq
GAGGTGCAT
5' ss Score
2.99
Exon sequences
Seq C1 exon
GCCCAGTGCTGCTGCTGTGTTATGGTGGGACCAGGAGCTGGAGACTGCCTGGGATGAGATGTGGCACCCAAAGATGAAGAGATCCTCAAGTGGCTTCAGGTTAAGAATAGGCGCCCCCAATGAGTCCACACCTATCAGCACAGGGACTCTGAGAGAGCTGT
Seq A exon
GGCTCGAGAGACGTCCTCCAATCCTGATGGACCTGGATGTCCCTGGCCCAGCCCAGTACGAGGTGCCCAATATGTCTCTGCGAGAGGCCTCTCCACACCCCCAATACACCATCGGTCGCAAGTACCCGGTTCGAG
Seq C2 exon
AGGGTGGTGGCCGCAGGGCATGGCAGACCATGTGGCTCCAAAGTGAAAGCCCCTTCATGCAGAAGACCGACTTCAACCGAGAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036770-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=0.489 C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGCTGCTGTGTTATGG
R:
TGTCTCTCGGTTGAAGTCGGT
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: