MmuEX6099430 @ mm9
Exon Skipping
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25088488-25089884:-
Coord C1 exon
chr2:25089700-25089884
Coord A exon
chr2:25089081-25089225
Coord C2 exon
chr2:25088488-25088598
Length
145 bp
Sequences
Splice sites
3' ss Seq
GCTGTCAAACTTTCTTTCAGCAA
3' ss Score
6.83
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGGATGACAAGGGTCTGAATAAGGCCTTGGGCCAGGCAGGGTCTCCCCTTGGGGGCCCCAGCTCCTGGGTAAACATTAATGGGGCTCCACACATAGCAGGTCATGTGCGCACCCGACAGATCTTTGACCTGCAGCTGTTCCCTCTGTGCCTCCTCCCTGCTGGTGCCCCCTCACCATACATGCAG
Seq A exon
CAAAGACCAGTGAGGGAGCTGGGAAGCCAGTGTCCCATTTCTTCTGCCCCCTGAAACTAGACTGGGTTTGTCTGATAACCATCCGAGGTCACCGTATCCATCTGTCTGTGGTCAGAGGAAAAGGAGAACCACCAAGACCTGCAAG
Seq C2 exon
CCCTACCTGACCTGACCCCTGCAGGAATCTCCGGTTCCATTCCAGGCTTGGAAGAGGGAGGTACAGATCCCTGGACCTTCTCTCCGCTGAAGAACGCTGACCAACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-'0-5,'0-1,1-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGACAAGGGTCTGAATAAGGC
R:
GTACCTCCCTCTTCCAAGCCT
Band lengths:
248-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: