MmuEX6099430 @ mm10
Exon Skipping
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25233303-25234364:-
Coord C1 exon
chr2:25234180-25234364
Coord A exon
chr2:25233561-25233705
Coord C2 exon
chr2:25233303-25233429
Length
145 bp
Sequences
Splice sites
3' ss Seq
GCTGTCAAACTTTCTTTCAGCAA
3' ss Score
6.83
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGGATGACAAGGGTCTGAATAAGGCCTTGGGCCAGGCAGGGTCTCCCCTTGGGGGCCCCAGCTCCTGGGTAAACATTAATGGGGCTCCACACATAGCAGGTCATGTGCGCACCCGACAGATCTTTGACCTGCAGCTGTTCCCTCTGTGCCTCCTCCCTGCTGGTGCCCCCTCACCATACATGCAG
Seq A exon
CAAAGACCAGTGAGGGAGCTGGGAAGCCAGTGTCCCATTTCTTCTGCCCCCTGAAACTAGACTGGGTTTGTCTGATAACCATCCGAGGTCACCGTATCCATCTGTCTGTGGTCAGAGGAAAAGGAGAACCACCAAGACCTGCAAG
Seq C2 exon
CAGAGCTAGGATTGGGCCTGGGTCTTCCCCTTCTTGAAATCCATGCCGAATTCCCTCGCCGGTGGCCAGGTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGAGTCTGAGAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-'1-5,'1-1,4-5=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.172
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGTAAACATTAATGGGGCT
R:
GCATTTCTCAGACTCCGGTCC
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types