RnoEX0082285 @ rn6
Exon Skipping
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2453029-2453933:-
Coord C1 exon
chr3:2453890-2453933
Coord A exon
chr3:2453309-2453418
Coord C2 exon
chr3:2453029-2453152
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTTGTCAAACTTCCTTTCAGCAA
3' ss Score
6.21
5' ss Seq
GTGGTCAGA
5' ss Score
1.29
Exon sequences
Seq C1 exon
CGCTGGGCCTCCTCCCCGCTGGTGCCCCCTCACCACACATGCAG
Seq A exon
CAAAGACCAGTGAGGGACCTGGGGAGCCAGTGTCCCGTTTCTTCTGCTCCCTGAAACTAGACTGGGCTCATCTGATAACCACCGGAGGTCACCGTATCCATCTGTCTGTG
Seq C2 exon
ATCTAGGATTGGGCCTGGGTCTTCCACTTCTTGAAATCCATGCCGAATTCCCTTGCTGGCGACCAGGTCCCCAACCCTACTCTGGATGCAATTGGCCTGGTGGACTGGAGTCTGAGAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.241
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCCCTCACCACACAT
R:
TGCATTTCTCAGACTCCAGTCC
Band lengths:
146-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]