MmuEX6099724 @ mm10
Exon Skipping
Gene
ENSMUSG00000026926 | Pmpca
Description
peptidase (mitochondrial processing) alpha [Source:MGI Symbol;Acc:MGI:1918568]
Coordinates
chr2:26390231-26391178:+
Coord C1 exon
chr2:26390231-26390310
Coord A exon
chr2:26390495-26390577
Coord C2 exon
chr2:26391084-26391178
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAGCTTAATTATTTTTATAGTCC
3' ss Score
2.6
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TTCTTATTAATTCAGGATCACGATATGAAGCGAAATATCTTAGTGGAATAGCTCATTTTTTGGAAAAATTGGCATTTTCG
Seq A exon
TCCACTGCTCGATTTGACAGCAAAGACGAAATCCTGCTTACGCTGGAAAAACATGGTGGTATCTGTGACTGCCAGACCTCAAG
Seq C2 exon
AGACACCACCATGTATGCTGTGTCTGCTGACAGCAAAGGCTTGGACACTGTGGTGGATCTGTTGGCTGATGTGGTTCTGCACCCCCGACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026926-'6-8,'6-4,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(17.2=100)
A:
PF0067515=Peptidase_M16=FE(17.9=100)
C2:
PF0067515=Peptidase_M16=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAGGATCACGATATGAAGCGA
R:
CTGTCAGTCGGGGGTGCAG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types