RnoEX0067592 @ rn6
Exon Skipping
Gene
ENSRNOG00000026775 | Pmpca
Description
peptidase, mitochondrial processing alpha subunit [Source:RGD Symbol;Acc:727897]
Coordinates
chr3:3835158-3836091:+
Coord C1 exon
chr3:3835158-3835237
Coord A exon
chr3:3835425-3835507
Coord C2 exon
chr3:3835997-3836091
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAACCTTATAATTTTTATAGTCT
3' ss Score
4.17
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
TTCTTATTAATTCAGGATCACGATATGAAGCGAAATATCTTAGTGGAATTGCTCATTTTCTGGAAAAATTGGCATTTTCG
Seq A exon
TCTACCGCTCGATTTGACAGCAAAGATGAAATTCTGCTTACCCTGGAAAAACATGGTGGTATCTGTGACTGCCAGACCTCGAG
Seq C2 exon
AGACACCACCATGTATGCTGTGTCTGCTGACAGCAAAGGCTTGGACACTGTGGTGGGCCTGCTGGCTGATGTGGTTCTGCACCCCCGCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026775-'6-3,'6-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(17.2=100)
A:
PF0067515=Peptidase_M16=FE(17.9=100)
C2:
PF0067515=Peptidase_M16=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGATCACGATATGAAGCGA
R:
GTGCAGAACCACATCAGCCAG
Band lengths:
151-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]