MmuEX6099765 @ mm9
Exon Skipping
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26441105-26444904:+
Coord C1 exon
chr2:26441105-26441195
Coord A exon
chr2:26444565-26444689
Coord C2 exon
chr2:26444850-26444904
Length
125 bp
Sequences
Splice sites
3' ss Seq
CAGGAGACATTTTGCCTTAGGCC
3' ss Score
2.21
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCCCCGGCAGCAGCAAGACGCTGGCTGTTCCACCTGCCCACAAGAACAGCCACCACCAGTACCCAGGGGATGACTAGCGGCCGGACCACAG
Seq A exon
GCCACAAAAAGAAGAAGGCTACCCCACTTACAGATGCAGACCATGTGGGGCTCCGGAGAACTGCTTGTAGCATGGTTTCTAGTGTTGGCAGCAGATGGTACTACTGAGCATGTCTACAGACCCAG
Seq C2 exon
CCGTAGAGTGTGTACTGTGGGGATTTCCGGAGGTTCCATCTCGGAGACCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921-'4-10,'4-9,8-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0249512=7kD_coat=PU(62.5=80.6)
C2:
PF0249512=7kD_coat=PD(35.0=73.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACGCTGGCTGTTCCAC
R:
CACAAAGGTCTCCGAGATGG
Band lengths:
133-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: