RnoEX0031157 @ rn6
Exon Skipping
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4036572-4040491:+
Coord C1 exon
chr3:4036572-4036734
Coord A exon
chr3:4040087-4040211
Coord C2 exon
chr3:4040375-4040491
Length
125 bp
Sequences
Splice sites
3' ss Seq
GATCCAACCTTTTGCCTTAGGCC
3' ss Score
7.41
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCTCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAAGGCGCTGGCCGTTCCGCTCACCCACAAGAACAGCTGCCACCAGTACCCTGGGGATGACTAGAGGCCGGACCACAG
Seq A exon
GCCACAAAAAGAAGAAGGCTACCCCACTTACAGATGCAGACCATGTGGGGGTCCGGAGAGCTGCTTGTAGCGTGGTTTCTAGTACTGGCAGCAGGTGGTACTACTGAGCATGTCTACAGACCCAG
Seq C2 exon
CCGTAGAGTGTGTACCGTGGGGGTTTCCGGAGGCTCCATCTCAGAGACCTTTGTGCAGCGTGTATACCAGCCTTACCTCACCACTTGTGATGGACACAGAGCCTGTAGCACCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388-'5-3,'5-1,11-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(0.1=0.0)
C2:
PF075468=EMI=PU(52.7=97.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAACAGCAGCAGCAG
R:
AAGTGGTGAGGTAAGGCTGGT
Band lengths:
249-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]