MmuEX6099804 @ mm10
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26991262-26994030:+
Coord C1 exon
chr2:26991262-26991447
Coord A exon
chr2:26992959-26993067
Coord C2 exon
chr2:26993907-26994030
Length
109 bp
Sequences
Splice sites
3' ss Seq
AATGTGACATGTGTGTCCAGGGC
3' ss Score
6.03
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTGGGTAGCTGGGGACTTCAGCCCATGTAGCGTGTCTTGTGGCGGGGGCCTTCGGGAGCGGTCACTGCGCTGTGTAGAGACCCAAGATGGCTTCTTAAAGACACTGCCACCTGCCCGGTGCAGAGCAGTAGCCCAGCAGCCAGCAGCAGAAGTGGAAAACTGCAACTCCCAGCCCTGTCCCACCAG
Seq A exon
GGCGGGTGACCCGGAGAAGCCAGAAACTGCAGGCCCCTGCCGCACCGACGAGATGTCAGCTATGCTGGAGCCCTGCTCCAGGAGCCTGTGTTCTCCAGGCTTGGGTCAG
Seq C2 exon
GTGGACAACACCATGTCTCTGGGAGAGGAGGCTCCATCCCCGGTGGGCAGTGACAAGCCAGGGGCTCAGGCTGAGCATGTGTGGACCCCTCTGGTGGGGCTGTGCTCCATCTCTTGTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-'22-27,'22-26,23-27
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.500
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=92.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGCGCTGTGTAGAGAC
R:
TCCCACAAGAGATGGAGCACA
Band lengths:
247-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types