MmuEX6099804 @ mm9
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26846782-26849550:+
Coord C1 exon
chr2:26846782-26846967
Coord A exon
chr2:26848395-26848587
Coord C2 exon
chr2:26849427-26849550
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTGAGTTGTGTTTTCCTCAGGTG
3' ss Score
9.38
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTGGGTAGCTGGGGACTTCAGCCCATGTAGCGTGTCTTGTGGCGGGGGCCTTCGGGAGCGGTCACTGCGCTGTGTAGAGACCCAAGATGGCTTCTTAAAGACACTGCCACCTGCCCGGTGCAGAGCAGTAGCCCAGCAGCCAGCAGCAGAAGTGGAAAACTGCAACTCCCAGCCCTGTCCCACCAG
Seq A exon
GTGGGAGGTGTCAGACCCTGGCCCTTGCATGTCATCTGCCTGTGAGGCAGGTCTGGACTCAAGGAATGTGACATGTGTGTCCAGGGCGGGTGACCCGGAGAAGCCAGAAACTGCAGGCCCCTGCCGCACCGACGAGATGTCAGCTATGCTGGAGCCCTGCTCCAGGAGCCTGTGTTCTCCAGGCTTGGGTCAG
Seq C2 exon
GTGGACAACACCATGTCTCTGGGAGAGGAGGCTCCATCCCCGGTGGGCAGTGACAAGCCAGGGGCTCAGGCTGAGCATGTGTGGACCCCTCTGGTGGGGCTGTGCTCCATCTCTTGTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.500
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=92.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGCGCTGTGTAGAGAC
R:
TCCCACAAGAGATGGAGCACA
Band lengths:
247-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: