MmuEX6100101 @ mm10
Exon Skipping
Gene
ENSMUSG00000059316 | Slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:MGI Symbol;Acc:MGI:1347347]
Coordinates
chr2:29810861-29811695:+
Coord C1 exon
chr2:29810861-29810970
Coord A exon
chr2:29811186-29811395
Coord C2 exon
chr2:29811569-29811695
Length
210 bp
Sequences
Splice sites
3' ss Seq
TGACACCACACCCACCCCAGATT
3' ss Score
4.08
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GAAACATCGTGGGGATTGGCCAGTGCTTACTCCACGGCATGACTGTGGTGATCCGGAAGAAGTTCTCAGCCTCCCGGTTCTGGGATGATTGTATCAAGTACAACTGCACA
Seq A exon
ATTGTACAGTACATTGGCGAGCTCTGCCGCTACCTCCTGAACCAGCCACCCCGTGAGGCTGAGTCTCGGCACAAGGTGCGCATGGCACTGGGCAACGGTCTCCGGCAGTCCATCTGGACCGACTTCTCCAGCCGTTTCCACATCCCCCAGGTGGCTGAGTTCTATGGGGCCACTGAATGCAACTGTAGCCTGGGCAACTTTGACAGCCGG
Seq C2 exon
GTGGGGGCCTGTGGCTTCAATAGCCGCATCCTGTCCTTTGTGTACCCTATCCGTTTGGTACGTGTCAATGAGGATACCATGGAACTGATCCGGGGACCCGATGGAGTCTGCATTCCCTGTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059316-'23-15,'23-12,27-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.3=100)
A:
PF0050123=AMP-binding=FE(15.9=100)
C2:
PF0050123=AMP-binding=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACATCGTGGGGATTGGCC
R:
TGGTTGACAGGGAATGCAGAC
Band lengths:
236-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types