MmuEX6100305 @ mm9
Exon Skipping
Gene
ENSMUSG00000026849 | Tor1a
Description
torsin family 1, member A (torsin A) [Source:MGI Symbol;Acc:MGI:1353568]
Coordinates
chr2:30816147-30819389:-
Coord C1 exon
chr2:30819214-30819389
Coord A exon
chr2:30818995-30819122
Coord C2 exon
chr2:30816147-30816717
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACTGCAATTGTTTCGGCAGCAA
3' ss Score
4.1
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACCAGTTACAGATGTGGATCAGAGGCAACGTGAGCGCCTGTGCTCGCTCCATCTTCATCTTTGATGAGATGGACAAGATGCATGCCGGCCTCATCGACGCCATCAAGCCTTTCCTAGACTATTACGATGTGGTAGATGAGGTCTCCTATCAGAAAGCCATCTTCATCTTCCTCAG
Seq A exon
CAATGCAGGGGCAGAGAGGATCACAGACGTGGCTCTGGATTTCTGGAAAAGTGGGAAGCAGAGGGAAGAAATCAAGCTCAGAGACATGGAGCCCGCCCTGGCCGTGTCGGTCTTCAATAACAAGAACA
Seq C2 exon
GTGGCTTCTGGCACAGCAGCCTCATTGACCGGAACCTCATAGATTATTTTGTCCCCTTCCTGCCCCTGGAGTACAAGCACCTGAAAATGTGCATCAGAGTGGAGATGCAGTCCCGAGGCTATGAAGTAGATGAGGACATCATCAGCAAGGTAGCGGAAGAGATGACGTTCTTCCCCAAGGAGGAGAAGGTCTTCTCTGACAAGGGCTGCAAGACTGTGTTCACCAAGCTGGACTACTACCTGGATGACTGAGGCCGGCTGCCAGGGCTGTGTCAGTCCGCTCCTCCCCAGAAGAGGCTTGGACACTTCCTGCTGAGGTTAGCGGGAGAATCCTGTTTCTGCTCCTCAGAGCCTGCAGGTGACCGCGCTGTAGGGACCACAGATGCAACATGGACCTGAAGCTCCTGGAGCCTCCAGAGATGAAAGCAGCTCCCAGCATTCTGGACTTGTGATTTTTTTAAAATTATGTTTTAATTTCAGGTGTTTCTGTTTTGAGGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026849-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=33.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGACGCCATCAAGCCTTTC
R:
TCTCTTCCGCTACCTTGCTGA
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: