GgaEX1059916 @ galGal3
Exon Skipping
Gene
ENSGALG00000004165 | TOR1A
Description
NA
Coordinates
chr17:6256661-6259087:-
Coord C1 exon
chr17:6258912-6259087
Coord A exon
chr17:6258693-6258820
Coord C2 exon
chr17:6256661-6258056
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCTCTTTTCTTAGCAA
3' ss Score
7.71
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GACCAATTGCAGTCATGGATTCGGGGAAACGTGAGCATCTGCCCCAGGTCAATCTTCATATTTGATGAAATGGATAAAATGCACGCAGGACTCATTGATGCCATCAAGCCATTTCTGGACTATTATGAGCTTCTGGATGGAGTGTCGTACCGACAAGCCATCTTCATATTCCTCAG
Seq A exon
CAACGCCGGAGCTGAAAAGATAACAGAAGTGGCACTCGATTTCTGGAGAAACGGGAAGGAGAGGGAAGATATACAGCTCACAGACATGCAGAACGCGCTGTCTGTGTCTGTCTTCAATAACAGAAATA
Seq C2 exon
GTGGATTTTGGCACAGCACCTTGATTGATAGAAATCTCATTGACTACTTTGTTCCCTTCCTGCCTCTGGAATACAAACATGTGAAAATGTGTGTCAGGGTTGAGATCGAATCCCGTGGCTACGCTGTGGATGAAGACATTTTAACCAGAGTAGCAGATGAGATGACCTACTTCCCCCGAGAGGAGAGGATTTATTCAGATAAAGGATGCAAAACTGTGGATGCAAAGCTGGATTATTACTATGACTTATAAGGCTTTCTTGCTGCAACCTGTAAAGAAGCGAATTTAACTTAATCATGAAGTGGAGAACCCGGGACATTTCATTTGTAAGCACTTCTTAAAGGAAGGAACGTTGTTTTAATTGGTATGTAAAGAAGCAGCAGCACCTCTGCATTTTTATTCTGTCACTACTCATGGCTCCCAGCACGGCAGCCTCATGCCATCAAGGTAAGGAAGAGCTGCACTGTGAACTGAGGGCTCTGACGGTGCTGAAGACTTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004165-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.7=33.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCCCAGGTCAATCTTCA
R:
ACGGGATTCGATCTCAACCCT
Band lengths:
255-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]