RnoEX0092830 @ rn6
Exon Skipping
Gene
ENSRNOG00000006894 | Tor1a
Description
torsin family 1, member A [Source:RGD Symbol;Acc:628863]
Coordinates
chr3:9800322-9803654:-
Coord C1 exon
chr3:9803479-9803654
Coord A exon
chr3:9803263-9803390
Coord C2 exon
chr3:9800322-9800908
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACTGCCGCTATTTCGGCAGCAA
3' ss Score
4.17
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACCAATTACAGATGTGGATTCGAGGCAACGTGAGCGCCTGTGCTCGGTCCATCTTCATCTTTGACGAGATGGACAAGATGCACGCCGGCCTCATCGACGCCATCAAGCCTTTCCTAGACTATTACGACGTGGTAGATGAGGTCTCCTATCAGAAGGCCATCTTCATCTTCCTCAG
Seq A exon
CAATGCAGGGGCAGAAAGGATCACAGACGTGGCTCTGGATTTCTGGAGAAGTGGGAAGCAGAGAGAGGAGATCAAGCTCAGAGACATGGAGCACGCCCTGGCCGTGTCGGTCTTCAATAACAAGAACA
Seq C2 exon
GTGGCTTCTGGCACAGCAGCCTCATTGACCGGAACCTCATAGACTATTTTGTCCCCTTCCTGCCCCTGGAGTACAAGCACCTGAAAATGTGCATCAGAGTTGAGATGCAGTCCCGTGGCTATGAAGAAGATGAGGACATAATCAATAAGGTAGCTGAAGAGATGACGTTCTTCCCCAAGGAGGAGAAGGTCTTCTCTGACAAGGGCTGCAAGACTGTGTTCACCAAGCTGGACTACTACCTGGATGACTGAGCCCTGCTGCCAGGTGCTCTGTAGTCCGCTCCTCTCCCCACAAGAGGCTTGGACACTTCCTGCTGAGGCTAGCGGGGATCCCATCAGGGGCGGTTTCTGCTCTTTGGAGCCTGCAGGTGGCCATGATGTAGGGACCACAGATGCAACATGGACCTAAAGCTCCTGGAGCCTCCAAAGGACGAAACCAGCTTCCAGCCTGCCCATTCTGGGCTCATGATTTTTTTAAAATTATGTTTTAATTTCAAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006894_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=33.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGATTCGAGGCAACGT
R:
TCAGGTGCTTGTACTCCAGGG
Band lengths:
249-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]