MmuEX6100404 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31350519-31353857:+
Coord C1 exon
chr2:31350519-31350640
Coord A exon
chr2:31352609-31352881
Coord C2 exon
chr2:31353716-31353857
Length
273 bp
Sequences
Splice sites
3' ss Seq
CTACACAACTGTCCCTGCAGACC
3' ss Score
8.12
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AGAGTCGGGAAACAGCAGCTGGGAGATCCCGAGAGCCTCTAAGGCTGAGGAAGGCACGTACCAGTGCATAGCCGTCAGCAGAGCTGGGTCAGGACGAGCCAGCGCCCAGATTGTCATCACAG
Seq A exon
ACCCTCCACCACAGCTGGTCCCTGGCCCCAATGTGACCGTGTCCCCAGGGGAGACTGCCATCCTGTCATGCCAAGTCCTAGGTGAAACTCCTTACAACTTGACCTGGGTCCGGGACTGGCGAGCCTTACCAGCCACAACAGGTCGGATCTCCCAGCTGAGTGACCTGTCTCTGGAAGTCCGCAGCATCATTCCCACTGATGGTGGGCAGTACCAGTGTGTGGCCAGCAACCCAAATGGGGTCACGAGGGCAACTACCTGGCTCCTGGTGCGAG
Seq C2 exon
AGGCCCCTCAAGTCAGCATCAATGCAAGGTCCCAGCGCTTCTCCCAGGGTGTGGAGGTGAGGGTCAGCTGCTCAGCCTCTGGGTACCCCACACCCCATATCTCATGGAGCCGTGAAGGCCTCGCCTTGCCAGAGGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'9-24,'9-15,10-24=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(46.0=95.2)
A:
PF0767911=I-set=WD(100=93.5)
C2:
PF0767911=I-set=PU(52.3=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCGGGAAACAGCAGCTG
R:
CTGCTGTCCTCTGGCAAGG
Band lengths:
263-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types