BtaEX6046766 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100647044-100650372:+
Coord C1 exon
chr11:100647044-100647165
Coord A exon
chr11:100649087-100649359
Coord C2 exon
chr11:100650231-100650372
Length
273 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTCCTGTTCCTGCAGGCC
3' ss Score
11.53
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGAGTCAGGGAACAGCAGCTGGGAGATTCCACGGGCCTCCAAGGCCGAAGAAGGCACGTATGAGTGCACGGCAGTCAGCCGGGCGGGGACCGGACGAGCAAAGACTCAGATCGTCGTCACAG
Seq A exon
GCCCCCCGCCGCAGCTGGTCCCTGTCCCCAATGTGACCGTGTCCCCTGGAGAGACCGCCATCCTGTCCTGCCTGGTCCTGAGTGAGGCCCCCTACAACCTGACCTGGGTCCGGGACTGGCGAGTCCTCTCGGCCTCGACGGGCAGAGTCACCCAGCTGGCCGACTTATCCCTGGAGGTCAGGAACACCACCCCCAGTGACGGCGGGCGGTACCAGTGCATGGCCAGCAACTCCAATGGAGTCACGAGGGCATCCGTCTGGCTCCTGGTGCGAG
Seq C2 exon
AGGCCCCGCAGGTCAGCATCCACACCAGGTCACAGCGCTTTTCCCAGGGCATGGAGGTGAGGGTCCGCTGCTCGGCCTCTGGATACCCTGCACCCCACATCTCCTGGAGCCGCGAGGGTCGCGCCCTGCAGGAGGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.250 C2=0.062
Domain overlap (PFAM):
C1:
PF0004720=ig=PD(41.4=57.1)
A:
PF138951=Ig_2=WD(100=95.7)
C2:
PF0767911=I-set=PU(52.3=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGGGAACAGCAGCTG
R:
TGCTGTCCTCCTGCAGGG
Band lengths:
262-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]