DreEX0037784 @ danRer10
Exon Skipping
Gene
ENSDARG00000086060 | hmcn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7EY71]
Coordinates
chr8:32643131-32649542:+
Coord C1 exon
chr8:32643131-32643252
Coord A exon
chr8:32648111-32648383
Coord C2 exon
chr8:32649401-32649542
Length
273 bp
Sequences
Splice sites
3' ss Seq
ATAATTTCACTTAATTTCAGAGC
3' ss Score
7.03
5' ss Seq
TAGGTATCG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGCTTCAGGTAAAGCATCATGGGAAATTCCTTATGCTTCAGGCGATGATGAGGGAGCTTATGAATGTGTGGCCAGGAGCACTGCCGGCATGGGACGAGCTCTCACGCAACTTACTGTCAGAG
Seq A exon
AGCCTCCTCCTGTCCTGCGTCCTCCTGTGAATGTGACCTCATCCCCAGGTACAGTGGCAGTGCTGTCCTGCCAGATTCAAGGCTCTGTGCGCCACAATCTGACCTGGTACCGGACAGGCAGCGCTTTACCATCCCGCTCAGGAAGGGTCAGAGTACTAGCCAATTCCTCTCTGGAGATCAGCTGGGTTCGCAGCCAGGATGCCGGGCCGTACCAGTGCAGAGCCTCAAACGCCCATGGAGAGAGTCAGGCTGTCGTCTGGCTGGTGGTCCTAG
Seq C2 exon
AGGCCCCATCTGTGGTTGTCTCCCCGCAGACACAGAGCTTCTCTCTGGGTGCAGAGGTACACATCTCCTGCTCGGCATCTGGATCTCCTCCTCCAAAGGTTTTCTGGAGCCATGGCAACATCTTTTTGTCCAACCACCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086060_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(51.3=92.9)
A:
PF0767911=I-set=WD(100=95.7)
C2:
PF0767911=I-set=PU(52.3=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGGTAAAGCATCATGGGA
R:
CGATGGTGGTTGGACAAAAAGA
Band lengths:
262-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]