RnoEX6044596 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68143078-68172354:-
Coord C1 exon
chr13:68172233-68172354
Coord A exon
chr13:68168004-68168279
Coord C2 exon
chr13:68143078-68143219
Length
276 bp
Sequences
Splice sites
3' ss Seq
AGTCTTCTGATTTCACACAGAGC
3' ss Score
6.13
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGAATCTGCCAGTGTGCCTTGGGATTTCCCAAAGGTGACGTTGTCTGACGAGGGCTTCTACGAGTGTATTGCTATGAACAGCGCAGGAACTGGACGGGCGCAGACATTTTTTGATGTATCAG
Seq A exon
AGCCCCCTCCGATCATCCAAGTGCCTAATAATGTAACAGTCACTCCTGGAGAAAGAGCAGTTTTGGCGTGTCTCGTCATCAGTGCCGTGGATTATAACCTAACCTGGCAGAGGAGTGGCAGGGATGTCCGGCTAGCAGACTCAGCAAGAATTAGGACCCTGGCCAACCTCTCCCTGGAGCTGCGGAGTGTGAAAATTGGTGATGCTGGGGAGTACCGTTGTGTGGTTTCCAGTGAAGGGGGATCGGCAGCAGCTTCGGTTTTCCTGACAGTACAAG
Seq C2 exon
AAAAACCCAAAGTCACCGTGATGCCCAGGAATCAGTCTTTCACAGGAGGGTCTGAGGTCTCCATCATGTGCTCTGCAACAGGCTATCCCAAACCAAAGATTGTCTGGACCATTAATGAGATGTTTATCCTGGGTTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
PF0767911=I-set=WD(100=95.7)
C2:
PF0767911=I-set=PU(52.3=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCTGCCAGTGTGCCTTG
R:
CTGTGTGAACCCAGGATAAACA
Band lengths:
264-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]