MmuEX6100673 @ mm10
Exon Skipping
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32975314-32977060:-
Coord C1 exon
chr2:32976861-32977060
Coord A exon
chr2:32976137-32976280
Coord C2 exon
chr2:32975314-32975484
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACAGGCCGTCTTTGTGACAGGGC
3' ss Score
6.2
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGGGTCCTAGAGTGGCGCTGGCTGGCCGTGCTGGGCTGTGTGCCCCCCACCCTCATGCTGCTGCTCATGTGCTACATGCCCGAGACCCCACGTTTTCTCCTCACTCAACACCAGTACCAGGAGGCCATGGCTGCCTTGCGCTTCCTGTGGGGCTCTGAGGAGGGCTGGGAAGAGCCCCCTGTTGGGGCTGAGCACCAG
Seq A exon
GGCTTCCAGCTGGCCCTGCTGAGGCGCCCTGGCATCTACAAGCCCCTCATCATCGGCATTTCCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAATGCTATCATGTTCTATGCCAACAGCATCTTCGAGGAGGCCAAGTTCAAG
Seq C2 exon
GTGTGATCATGGTGTTCAGTATGAGTGCCTTTGGTACCTACTTCAAACTGACCCAGAGCCTCCCCAGCAACTCCTCCCACGTAGGCCTGGTGCCCATCGCGGCGGAGCCTGTGGATGTCCAAGTGGGACTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791-'7-12,'7-6,8-12=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(14.8=100)
A:
PF0008319=Sugar_tr=PU(41.7=96.2)
C2:
PF0008319=Sugar_tr=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTACCAGGAGGCCATG
R:
CAATGAAGAGGCACATGCTGC
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types