RnoEX6016500 @ rn6
Exon Skipping
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12023141-12024653:-
Coord C1 exon
chr3:12024454-12024653
Coord A exon
chr3:12023358-12023501
Coord C2 exon
chr3:12023141-12023249
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACAGGCCATCTTTGTGACAGGGC
3' ss Score
5.65
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTGGGTCCTAGAATGGCGCTGGTTGGCTGTGCTGGGCTGTGTGCCCCCCACCCTCATGCTGCTGCTCATGTGCTACATGCCCGAGACCCCACGCTTCCTCCTGACGCAACACCAGTACCAGGAGGCCATGGCTGCCCTGCGCTTCCTGTGGGGCTCTGAGGAGGGCTGGGAAGAGCCCCCTGTTGGGGCTGAGCACCAG
Seq A exon
GGCTTCCAGCTGGCTATGCTGAGGCGCCCTGGTGTCCACAAGCCCCTCATCATCGGCATTTGCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAACGCCATCATGTTCTATGCCAACACCATCTTTGAGGAGGCCAAGTTCAAG
Seq C2 exon
GACAGCAGCCTGGCCTCGGTCACTGTGGGCATCATCCAGGTTCTGTTCACTGCTGTGGCGGCCCTCATCATGGACAGAGCAGGGCGAAAACTGCTTCTGGCCTTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274-'4-12,'4-8,7-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(14.8=100)
A:
PF0008319=Sugar_tr=FE(10.5=100)
C2:
PF0008319=Sugar_tr=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCTGCTCATGTGCTA
R:
CGACAAGGCCAGAAGCAGTTT
Band lengths:
253-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]