MmuEX6100855 @ mm10
Exon Skipping
Gene
ENSMUSG00000026882 | 4930568D16Rik
Description
RIKEN cDNA 4930568D16 gene [Source:MGI Symbol;Acc:MGI:1923109]
Coordinates
chr2:35362320-35366284:-
Coord C1 exon
chr2:35366199-35366284
Coord A exon
chr2:35364754-35364789
Coord C2 exon
chr2:35362320-35362367
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTTTTCCCTTAAAGAAC
3' ss Score
8.8
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAAGGAATGCAGTATAAAAAAGAAGCACTGTTGCTAATGCTGTTTGCTGTATTGCTGGCACTAACTCAACGCTTCTCCTACTCCAG
Seq A exon
AACAAAGGATCACCTACAGAAGATGTATGCCTGCTG
Seq C2 exon
GAAAGATCACTTAGAAGAACCTCATCTCTCCACCTGGTTTGATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026882-'2-4,'2-2,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(5.8=66.7)
A:
PF034148=Glyco_transf_6=FE(3.9=100)
C2:
PF034148=Glyco_transf_6=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCTAATGCTGTTTGCTGT
R:
TGGATCAAACCAGGTGGAGAGA
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types