MmuEX6100855 @ mm9
Exon Skipping
Gene
ENSMUSG00000026882 | 4930568D16Rik
Description
RIKEN cDNA 4930568D16 gene [Source:MGI Symbol;Acc:MGI:1923109]
Coordinates
chr2:35217840-35221804:-
Coord C1 exon
chr2:35221719-35221804
Coord A exon
chr2:35220274-35220309
Coord C2 exon
chr2:35217840-35217887
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTTTTCCCTTAAAGAAC
3' ss Score
8.8
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAAGGAATGCAGTATAAAAAAGAAGCACTGTTGCTAATGCTGTTTGCTGTATTGCTGGCACTAACTCAACGCTTCTCCTACTCCAG
Seq A exon
AACAAAGGATCACCTACAGAAGATGTATGCCTGCTG
Seq C2 exon
GAAAGATCACTTAGAAGAACCTCATCTCTCCACCTGGTTTGATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026882-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(5.8=66.7)
A:
PF034148=Glyco_transf_6=FE(3.9=100)
C2:
PF034148=Glyco_transf_6=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCTAATGCTGTTTGCTGT
R:
TGGATCAAACCAGGTGGAGAGA
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: