MmuEX6100937 @ mm9
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37340594-37442074:-
Coord C1 exon
chr2:37442030-37442074
Coord A exon
chr2:37436193-37436326
Coord C2 exon
chr2:37340594-37340738
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGACCCTCTGTGTATTTCAGGTT
3' ss Score
9.41
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTACGGAACCCCATATGGTTACAGCACAGCTGCCCCTGCATATG
Seq A exon
GTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAG
Seq C2 exon
GGTCCTTCCTATTATTCAAAGAAATATTTCACTTAAAAAACCAAACCAGCCAGGCATGGCAGCTCAGACCTATACTATCAGCGGCTGGGAAGCTAAGACTGGAGGGCTACTGTGAATCTGTGGCCGGCTGGAGCTTCATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-'31-38,'31-35,35-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATATGGTTACAGCACAGC
R:
CTCAGAATGAAGCTCCAGCCG
Band lengths:
181-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: