HsaEX0062620 @ hg19
Exon Skipping
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:16462]
Coordinates
chr9:125871836-125895247:-
Coord C1 exon
chr9:125895124-125895247
Coord A exon
chr9:125884472-125884605
Coord C2 exon
chr9:125871836-125872032
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGACCCTCTGTGTATTTCAGGTT
3' ss Score
9.41
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCAAAGGGCGTTGTGAATACAGCTGTGTCTGCAGCAGTCCAAGCTGTTCGGGGCAGAGGAAGAGGAACTCTAACAAGGGGAGCTTTTGTTGGGGCGACAGCTGCTCCTGGCTACATAGCTCCAG
Seq A exon
GTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGGACCTTCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATACAAAG
Seq C2 exon
CGTGACTGAAGCAGCAGCCTGCACATGTGGATGGTCATCAGTGCCTCGCCCAGAGATACCTGGCCTTCATCCAAAGGGACCCTGCTGCCACAAGTCCTCCAGGCAGCACCCGCACTGTGGCTCCTTCGCACTGAGTATGTTGGACTCTGCCATAGACTGACCCTCTTGTCTGGCTGCTGCAGTTTGTCTGTAATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCGTTGTGAATACAGCTG
R:
ATACTCAGTGCGAAGGAGCCA
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)