HsaEX0062616 @ hg19
Exon Skipping
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:16462]
Coordinates
chr9:125878208-125884502:-
Coord C1 exon
chr9:125884472-125884502
Coord A exon
chr9:125882444-125882508
Coord C2 exon
chr9:125878208-125878377
Length
65 bp
Sequences
Splice sites
3' ss Seq
AGGTTTCTCGGTGTTATTAGGAG
3' ss Score
4.43
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
TGACTGTAAGCTGTGATCTCAGTATACAAAG
Seq A exon
GAGTCTTGGAAAGGAGATGGGTGGTAAATGGATAACAACAGCAGAGCCAAGAAACTACTGCTGAG
Seq C2 exon
AGGCTACGTTAAAGGAATATGGTAGCCATCATCTGGGAGGTAAAAAACCTATGGAAATTGGCACCTGGGGAACTCAGGAAAGCTGAAAGCACCTTGAAATGAGATGGAAGGACCAGAAGGTTAAGGCTGGTGAAGAGGAGACCTGGAGAGAACGTGGGCACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209-'34-32,'34-31,36-32
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTAAGCTGTGATCTCAGT
R:
TCCAGGTCTCCTCTTCACCAG
Band lengths:
178-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)