HsaEX0062621 @ hg19
Exon Skipping
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:16462]
Coordinates
chr9:125871836-125884605:-
Coord C1 exon
chr9:125884472-125884605
Coord A exon
chr9:125878208-125878377
Coord C2 exon
chr9:125871836-125872032
Length
170 bp
Sequences
Splice sites
3' ss Seq
AAAATCCCTCATTCCTGCAGAGG
3' ss Score
7.21
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGGACCTTCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATACAAAG
Seq A exon
AGGCTACGTTAAAGGAATATGGTAGCCATCATCTGGGAGGTAAAAAACCTATGGAAATTGGCACCTGGGGAACTCAGGAAAGCTGAAAGCACCTTGAAATGAGATGGAAGGACCAGAAGGTTAAGGCTGGTGAAGAGGAGACCTGGAGAGAACGTGGGCACTCCTGCCAG
Seq C2 exon
CGTGACTGAAGCAGCAGCCTGCACATGTGGATGGTCATCAGTGCCTCGCCCAGAGATACCTGGCCTTCATCCAAAGGGACCCTGCTGCCACAAGTCCTCCAGGCAGCACCCGCACTGTGGCTCCTTCGCACTGAGTATGTTGGACTCTGCCATAGACTGACCCTCTTGTCTGGCTGCTGCAGTTTGTCTGTAATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209_MULTIEX1-3/3=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGACCTTCGTAGCCATA
R:
GCCAGACAAGAGGGTCAGTCT
Band lengths:
255-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)