MmuEX6101164 @ mm10
Exon Skipping
Gene
ENSMUSG00000026765 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:MGI Symbol;Acc:MGI:1919147]
Coordinates
chr2:49903376-49934827:+
Coord C1 exon
chr2:49903376-49903452
Coord A exon
chr2:49930925-49930984
Coord C2 exon
chr2:49934762-49934827
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTTTTAATTAGGTG
3' ss Score
10.15
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACTGCTTTACTTTGTTGGATGAAGACCTGTTCCCTGCCGCCGTGTAGAGACCAACTAACCAGGTTGTCTTTCTTAAG
Seq A exon
GTGTCCTTGAATGAGAGAAACAAGGACTAGAAGAGGAGGAAGAAGACTTGGGTAAGGAAG
Seq C2 exon
GAGTTTCCCTAGAAGATGGAATGTTTCAGTCCAAAGACGCCTGGAAATGTGCTCTAGTTTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026765-'10-18,'10-14,21-18=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTACTTTGTTGGATGAAGACC
R:
CTAGAGCACATTTCCAGGCGT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types