MmuEX6101164 @ mm9
Exon Skipping
Gene
ENSMUSG00000026765 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:MGI Symbol;Acc:MGI:1919147]
Coordinates
chr2:49719331-49793553:+
Coord C1 exon
chr2:49719331-49719426
Coord A exon
chr2:49786445-49786504
Coord C2 exon
chr2:49793373-49793553
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTTTTAATTAGGTG
3' ss Score
10.15
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGTTATGAATAATCCCTGATTGCTGTCGTGCTGAGTGGGTAAATGACAAAGGGCAGAGGGAATTTTGGTGTCAGACGCCTGCTTTCTCCAACTCTG
Seq A exon
GTGTCCTTGAATGAGAGAAACAAGGACTAGAAGAGGAGGAAGAAGACTTGGGTAAGGAAG
Seq C2 exon
CAGCTGAAGGTACTCTCGTGCTGGCTGACTCGTGCATTAGGAATCGAGTGAGCAATGCAGTATTGACTGTTGCACTTTGGTCTTTGGGTTTCTCTTGGAAGTCCATCATTTAACAGCCTCGGATGCCCTGCCAGCTCCTTCGTGCCTTTGTTTGACTCTCTACGAAAGGCGCTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026765-'4-12,'4-10,9-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATTGCTGTCGTGCTGAGT
R:
TGCATTGCTCACTCGATTCCT
Band lengths:
140-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: