MmuEX6101168 @ mm10
Exon Skipping
Gene
ENSMUSG00000026766 | Mmadhc
Description
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria [Source:MGI Symbol;Acc:MGI:1923786]
Coordinates
chr2:50292809-50296717:-
Coord C1 exon
chr2:50296643-50296717
Coord A exon
chr2:50296252-50296309
Coord C2 exon
chr2:50292809-50292953
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGCTCTCTCCCAGGGA
3' ss Score
10.85
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TGCCTGGACCGCAGTAGCCGCCATCTTGCCAGTGGACGGGGTGAGGGCCGGGGCGCGGAGGCCGCGCGGTGACTG
Seq A exon
GGATACTTTGCAGTGGGGCAAGAATTTGCGTCCGCCTTCTTCACTAGAAATGGCCCAT
Seq C2 exon
GTGCTCTGTAACAGAGCCAGACTGGTTTCCTATCTCCCAGGATTTTGTTCTTTAGTGAAAAGAGTCATCAATCCAAGAGCCTTTTCAACTGCAGGATCTTCAGGTTCTGATGAGTCTCATGTGGCCACCGCACCTCCAGATATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026766-'1-4,'1-3,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.347
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF102294=DUF2246=PU(11.6=65.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTTGCCAGTGGACGGG
R:
TGCAGTTGAAAAGGCTCTTGGA
Band lengths:
147-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types