MmuEX6101288 @ mm9
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52049900-52051244:-
Coord C1 exon
chr2:52051140-52051244
Coord A exon
chr2:52050940-52051044
Coord C2 exon
chr2:52049900-52049998
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCTCCCCACTTTAGTTG
3' ss Score
8.94
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
AGACTATATCGAGAACTGTATCACAAACTAAAAGACAAGATACATACAACCCCAGACACACCTGAAATCCGCCAAGTCAAGAAGACACAAGAAGCTGTCAGTGAG
Seq A exon
TTGATCTACAAATCAGACTTCTTCAAGATGCAGGGCCACATGATCTCCCTGCCGTATACACCCCAAGTGTTGCACTGTCGCTACGTGGGAGACATCACGAGTGAT
Seq C2 exon
ATTAAATACAAAGAGGATCTGCAGATCTTGAAGGGGCTTGGCTGCTTCCTGTATGACACTCCTGACATGGTCCGCTCCCGGCACCTAAGGAAACTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'121-122,'121-121,122-122=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
C2:
PF0088013=Nebulin=PD(39.3=33.3),PF0088013=Nebulin=PU(48.3=42.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTATATCGAGAACTGTATCACAA
R:
CAGAGTTTCCTTAGGTGCCGG
Band lengths:
203-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: